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issues2
Conservation Report December 2008
Comments on Biological Indicators 6-24-08
Conservation Report June 2008
Barbed and Barbless Hooks: A Literature Review
Oregon Fish Not Protected
Conservation Report May 2008
Ian Ferguson on the Salmonberry and the Storm
Gustafson: Pacific Salmon Extinctions: Quantifying Lost and Remaining Diversity
Hatcheries and Wild Salmon Recovery
Mangement and Policy Problems
Recommended Reading
Disease
Fitness
- Smith, 2000: Trends in Wild Adult Steelhead (Oncorhynchus mykiss) Abundance for Coastal Regions of British Columbia Support the Variable Marine Survival Hypothesis
- Smith, 2000: Trends in Wild Adult Steelhead (Oncorhynchus mykiss) Abundance for Snowmelt-driven Watersheds of British Columbia in Relation to Freshwater discharge
- Schreck, 2006: Mortality Estimates of Juvenile Spring-Summer Chinook Salmon in the Lower Columbia River and Estuary, 1992-98: Evidence for Delayed Mortality?
- Taylor, 1991: A Review of Local Adaptation in Salmonidae, with Particular Reference to Pacific and Atlantic Salmon
- Rand, 1998: Swim Speeds and Energy Use of Upriver-Migrating Sockeye Salmon (O. nerka): Simulating Metabolic Power and Assessing Risk of Energy Depletion
- Hawkins, 1998: Early Survival and Development of Coastal Cutthroat Trout (O. clarki clarki) and Steelhead (O. mykiss), and Reciprocal Hybrids
- Ward, 2000: Declivity in Steelhead (Oncorhynchus mykiss) Recruitment at the Keogh River Over the Past Decade
- Smith, 2000: Trends in Wild Adult Steelhead (Oncorhynchus mykiss) Abundance in British Columbia as Indexed by Angler Success
- Ford, 2002: Supportive Breeding May Reduce Fitness in Wild
- Bahls, 2001: How Healthy are Healthy Stocks? (.pdf)
Genetic Variation
- Withler, 2000: Intact Genetic Structure and High Levels of Genetic Diversity in Bottlenecked Sockeye Salmon (Oncorhynchus nerka) Populations of the Fraser River, British Columbia, Canada
- Unwin, 2003: Genetic Control Over Survival in Pacific Salmon (Oncorhynchus spp.): Experimental Evidence Between Between and Within Populations of New Zealand Chinook Salmon(O. tshawytscha)
- Kinnison, 1998: Population-Specific Variation in Body Dimensions of Adult Chinook Salmon (O. tshawytscha) from New Zealand and their Source Population, 90 Years After Introduction
- Hendry, 2002: Genetic and Phenotypic Variation Through the Migratory Season Provides Evidence for Multiple Populations of Wild Steelhead in the Dean River, BC
- Narum, 2006: Small-Scale Genetic Structure and Variation in Steelhead of the Grande Ronde River, Oregon, USA
- Hendry, 1997: Variation in Adult Life History and Morphology Among Lake Washington Sockeye Populations in Relation to Habitat Features and Ancesteral Affinities
- Lu, 1997: Mitochondrial DNA Diversity, Population Structure, and Conservation Genetics of Four Native Carps Within the Yangtze River, China
- Carney, 1997: Mitochondrial DNA Restriction Site Variation Within and Among Five Populations of Alaskan Coho Salmon
- Domanico, 1997: Phylogenetic Analysis of Pacific Salmon (genus Oncorhynchus) using Nuclear and Mitochondrial DNA Sequences
- Heihaus, 1997: Genetic Variation and Conservation of Stream Fishes: Influence of Ecology, Life History and Water Quality
- Fontaine, 1997:A Genetic Test of Metapopulation Structure in Atlantic Salmon (Salmo salar) Using Microsatellites
- Beacham, 1999: Application of Microsatellite DNA Variation to Estimation of Stock Composition and Escapement of Nass River Sockeye Salmon(O.nerka)
- Koljonen, 1999: Phylogeographic Lineages and Differentiation Pattern of Atlantic Salmon (Salmo salar) in the Baltic Sea with Management Implications
- Kinnison, 1998: Egg Size, Fecundity and Develoment Rate of Two Introduced New Zealand Chinook Salmon (O. tshawytscha) Populations
- Hebert, 1998: Quantitative Genetic Variation and Genotype by Environment Interaction of Embryo Development Rate in Pink Salmon (O. gorbuscha)
- Nielson, 1998: Population Genetics and the Conservation and Management of Atlantic Salmon (Salmo salar)
- Heath, 2002: Relationships Between Heterozygosity, Allelic Distance, and Reproductive Traits in Chinook Salmon (Oncorhynchus tshawytscha)
- Fleming, 2002: Effects of Domestication on Growth Physiology and Endocrinology of Atlantic Salmon (Salmo salar)
- Banks, 2000: Analysis of Microsatellite DNA Resolves Genetic Structure and Diversity of Chinook Salmon (Oncorhynchus tshawytscha) in California's Central Valley
- Burger, 2000: Genetic Contribution of Three Introduced Life History Forms of Sockeye Salmon to Colonization of Frazer Lake, Alberta
- Gharret, 1992: Adaptive Importance of Genetic Infrastructure In Salmon pop.
- Gleeson: The Role of Genetics in Biodiversity Conservation
- Hedrick, 1995: : Effective Population Size in Winter-Run Chinook Salmon
- Hendry, 2001: Adaptive Divergence and the Evolution of Reproductive Isolation
- Herbert, 1998: Genetic Variation in Pink Salmon
- Williams: Geographic Variation in Geneitc and Meristic Characters of Coastal Cutthroat Trout (Oncorhynchus clarki clarki)
- Geiger, 1997: Variability of Family Size and Marine Survival of Pink Salmon
- Perry, 2000: Native Salmon, like native trees, are superior
- Cleary, 1978: Regenerating Oregon's Forests
- Busack, 1991: Genetic Diversity and Conservation in Columbia Basin Salmon and Steelhead Populations
- Theriault, 2008: The Impact of Fishing Induced Mortality on the Evolution of Alternative Life-history Tactics in Brook Charr
Habitat Use
- McCullough, 2001: Summary of Technical Literature Examining the Physiological Effects of Temperature on Salmonids
- Geist, 2000: Suitability Criteria Analyzed at the Spatial Scale of Redd Clusters Improved Estimates of Fall Chinook Salmon (Oncorhynchus tshawytsch) Spawning Habitat use in the Hanford Reach, Columbia River
- Berejikian, 2000: Social Dominance, Growth, and Habitat Use of Age-0 Steelhead (Oncorhynchus mykiss) Grown in Enriched and Conventional Hatchery Rearing Environments
- Piccolo, 2002: Does Red Alder (Alnus rubra) in Upland Riparian Forests Elevate Macroinvertebrate and Detritus Export from Headwater Streams to Downstream Habitats in Southeastern Alaska?
- Zoellick, 2006: Evaluating Redband Trout Habitat in Sagebrush Desert Basins in Southwestern Idaho
- Goniea, 2006: Behavioral Thermoregulation and Slowed Migration by Adult Fall Chinook Salmon in Response to High Col. River Water Temps
- High, 2006: Temporary Staging of Columbia River Summer Steelhead in Coolwater Areas and its Effect on Migration Rates
- Hughes, 2004: A Biointegrity Index for Coldwater Streams of Western Oregon and Washington
- Wilkie, 1997: Influences of Temperature upon the Postexcercise Physiology of Atlantic Salmon
- Mesa, 1997: Predator Avoidance Ability of Juvenile Chinook Salmon Subjected to Sublethal Exposures of Gas-supersaturated Water
- Quinn, 1997: Temperature, Flow and the Migration of Adult Sockeye Salmon(O. nerka) in the Columbia River
- Whalen, 1999: Effect of Ice Formation on Selection of Habitats and Winter Distribution of Post-young-of-the-year Atlantic Salmon Parr
- Montgomery, 1999: Channel Type and Salmonid Spawning Distribution and Abundance
- Schaller, 1999: Contrasting Patterns of Productivity and Survival Rates for Stream-type Chinook Salmon(O. tshawytscha) Populations of the Snake and Columbia Rivers
- Bult, 1999: Density-dependent Habitat Selection by Juvenile Atlantic Salmon (Salmo salar) in Experimental Riverine Habitats
- McKormick, 1999: Temperature-related Loss of Smolt Characteristics in Atlantic Salmon (Salmo salar) in the Wild
- Whalen, 1999: Nocturnal Habitat Use of Atlantic Salmon Parr in Winter
- Harvey, 1999: Influence of Large Woody Debris and a Bankfull Flood on Movement of Adult Resident Coastal Cutthroat Trout (O. clarki) During Fall and Winter
- Kroglund, 1999: Water Quality Requirements of Smolting Atlantic Salmon (Salmo salar) in Limed Acid Rivers
- McHenry, 1998: Changes in the Quantity and Characteristics of Large Woody Debris in Streams of the Olympic Peninsula, Washington, USA, (1982-1993)
- Harvey, 1998: Influence of Large Woody Debris on Retention, Immigration, and Growth of Coastal Cutthroat Trout (O. clarki clarki) in Stream Pools
- Berg, 1998: Function and Dynamics of Woody Debris in Stream Reaches in the Central Sierra Nevada, California
- Nickelson, 1998: Population Viability of Coho Salmon (Oncorhynchus kisutch), in Oregon Coastal Basins: Application of a Habitat-Based Life Cycle Model
- Cunjak, 1998: Atlantic Salmon (Salmo salar) in Winter: "The Season of Parr Discontent?"
- Latterell, 2003: Physical Constraints on Trout (Oncorhynchus spp.) Distribution in the Cascade Mountains: A Comparison of Logged and Unlogged Streams
- Ebersole, 2003: Thermal Heterogeneity, Stream Channel Morphology, and Salmonid Abundance in Northeastern Oregon Streams
- Collins, 2002: Historical Changes in the Distribution and Functions of Large Wood in Puget Lowland Rivers
- Pess, 2002: Landscape Characteristics, Land use, and Coho Salmon (O. kisutch) Abundance, Snohomish River, Wash
- Wing, 2002: Relationships of Channel Characteristics, Land Ownership, and Land Use Patterns to Large Woody Debris in Western Oregon Streams
- Mazumder, 2002: Impact of Fertilization and Stocking on Trophic Interactions and Growth of Juvenile Sockeye Salmon (Oncorhynchus nerka)
- Lund, 2002: The Effects of Environmental Heat Stress on Heat-Shock mRNA and Protein Expression in Miramichi Atlantic Salmon (Salmo Salar) Parr
- Harwood, 2002: Intra- and Inter- Specific Competition for Winter Concealment Habitat in Juvenile Salmonids
- Mellina, 2002: Stream Temperature Responses to Clearcut Logging in British Columbia: The Moderating Influences of Groundwater and Headwater Lakes
- Bardonnet, 2000: Freshwater Habitat of Atlantic Salmon (Salmo salar)
- Isaak, 2000: Are Trout Populations Affected by Reach-scale Stream Slope?
- Stauffer, 2000: Relationship of Wooded Riparian Zones and Runoff Potential to Fish Community Composition in Agricultural Streams
- Rosenfeld, 2000: Habitat Factors Affecting the Abundance and Distribution of Juvenile Cutthroat Trout (Oncorhynchus clarki) and Coho Salmon (Oncorhynchus kisutch)
- Rot, 2000: Stream Channel Configuration, Landform, and Riparian Forest Structure in the Cascade Mountains, Washington
- Solazzi, 2000: Effects of Increasing Winter Rearing Habitat on Abundance of Salmonids in Two Coastal Oregon Streams
- Lonzarich, 2000: Effects of Riffle Length on the Short-term Movement of Fishes Among Stream Pools
- Geist, 2000: Hyporheic Discharge of River Water into Fall Chinook Salmon (Oncorhynchus tshawytscha) Spawning Areas in the Hanford Reach, Columbia River
- Gianniso, 2000: Habitat Selection by Juvenile Coho Salmon in Response to Food and Woody Debris Manipulations in Suburban and Rural Stream Sections
- Thurow, 2000: Status and Distribution of Chinook Salmon and Steelhead in the Interior Columbia River Basin
- Levings, 1986: Differential use of the Campbell River estuary, British Columbia, by wild and hatchery-reared juvenile chinook salmon (Oncorhynchus tshawytscha).
- Goodnight, 1971: Fish Production in Two Idaho Streams
- Lang, 2003: Beaver Ponds and Coho in Alaska
- Pollack, 2004: Importance of Beaver Ponds to Coho Salmon
- Bonneville Power Adminsitration, 1997: Hanford Reach Fall Chinook
- Cotter, 2003: Metolious River Redband Trout Redd survey
- Johnson, 2005: Effects of an Increase of Large Wood on Abundance and Survival of Juvenile Salmonids (Oncorhynchus spp.) an Oregon Coastal Stream
Life History
- Zimmerman, 2000: Population Structure of Sympatric Anadromous and Nonanadromous Oncorhynchus mykiss: Evidence From Spawning Surveys and Otolith Microchemistry
- Mackey, 2001: Comparisons of Run Timing, Spatial Distribution, and Length of Wild and Newly Established Hatchery Populations of Steelhead in Forks Creek, WA
- A Conceptual Framework for Evaluating Estuarine Habitat Conditions
- Fukushima, 1997: Abstract: Determinants of Stream Life, Spawning Efficiency, and Spawning Habitat in Pink Salmon in the Auke Lake System, Alaska
- Harvey, 1997: Abstract: Habitat-dependent Interactions Between Two Size-classes of Juvenile Steelhead in a Small Stream
- Unwin, 1997: Abstract: Changes in Life History Parameters in a Naturally Spawning Population of Chinook Salmon Associated with Releases of Hatchery-reared Fish
- Bradford, 1997: Abstract: Individual Variation in Dispersal Behavior of Newly Emerged Chinook Salmon(O. tshawytscha) from the Upper Fraser River, B.C.
- Wahlen, 1999: Abstract: Effect of Maturation on Parr Growth and Smolt Recruitment of Atlantic Salmon
- Roper, 1999: Abstract: Emigration of Age-0 Chinook Salmon(O. tshawytscha) Smolts from the Upper South Umpqua River Basin, Oregon
- Zabel, 1998: Abstract: A Multiple-Reach Model Describing the Migratory Behavior of Snake River Yearling Chinook Salmon (O. tshawytscha)
- Hutchings, 1998: Abstract: Life History Variation and Growth Rate Thresholds for Maturity in Atlantic Salmon (Salmo salar)
- Jonsson, 2003: Abstract: Energy Allocation Among Developmental Stages, Age Groups, and Types of Atlantic Salmon (Salmo salar) Spawners
- Isaak, 2003: Abstract: Temporal Variation in Synchrony Among Chinook Salmon (O. tshawytscha) Redd Counts from a Wilderness Area in Central Idaho
- Stewart, 2002: Abstract: Tributary-Specific Variation in Timing of Return of Adult Atlantic Salmon(Salmo Salar) to Fresh Water has a Genetic Componet
- Morbey, 2000: Abstract: Protandry in Pacific Salmon
- Whalen, 2000: Abstract:: Cross-Tributary Analysis of Parr to Smolt Recruitment of Atlantic Salmon (Salmo salar)
- Coughlin, 1991: Abstract: Ontongeny of feeding between of first-feeding Atlantic salmon
- Bonneville Power Administration, 1997: Early life History of Spring Chinook in the Grande Ronde
- Coho Salmon, o.kisutch
Management
- Paulsen, 2002: Abstract: Experimental Management for Snake River Spring-Summer Chinook (O. tshawytscha): Trade-offs Between Conservation and Learning for a Threatened Species
- Meengs, 2005: Abstract: Estimating the Size of Historical Oregon Salmon Runs
- Lackey, 2003: Abstract: Pacific Northwest Salmon: Forecasting their Status in 2100
- Young, 1999: Abstract: Managing the Decline of Pacific Salmon: Metapopulation Theory and Artificial Recolonization as Ecological Mitigation
- Skalski, 1998: Abstract: Estimating Season-Wide Survival Rates of Outmigrating Salmon Smolt in the Snake River, Washington
- Richards, 1998: Abstract: Recent International Agreements and the Precautionary Approach: New Directions for Fisheries Management Science
- Bisbal, 2002: Abstract: The Best Available Science for the Management of Anadromous Salmonids in the Columbia River Basin
- Korman, 2002: Abstract: Effects of Observer Efficiency, Arrival Timing and Survey Life on Estimates of Escapement for Steelhead Trout(O. mykiss) Derived from Repeat Mark-Recapture Experiments
- Parrish, 1998: Abstract: Why Arn't there more Atlantic Salmon (Salmo salar)?
- Ham, 2000: Abstract: Can Reduced Salmonid Population Abundance be Detected in Time to Limit Management Impacts?
- Yuen, 2005: Decline of Snake River Summer Steelhead
- Dodson, 1998: Elements in the Development of Conservation Plans for Atlantic Salmon
- Kapuscinski, 1988: Abstract: Fisheries Genetics: Issues and Priorities
- Meffe, 1992: Abstract: Salmon Hatcheries on the Pacific Coast of North America
- Phillips, 2000: Abstract: Anadromous Salmonid Recovery in the Umatilla River Basin
- 2002: Native Wild Fish Conservation Criteria
- Bakke, 2002: Comments to NMFS Re:Steelhead Passage and Fishway Maint.
- Bakke, 1997: Memo to Columbia River Fish Management Plan
- Bakke, 1997: Comments on first stage Consultation Document for license
- Bakke: Wild Trout in North America: Regional Perspectives
- Chilcote, 1999: Lower Columbia River Wild Coho Salmon: A scientific assessment
- Watershed Councils unable to save coho
- Bakke, 1997: Comments on ODFW Steelhead status
- Oregon Steelhead ESA listing
- Bakke, 1997: Washington State wild salmonid policy evaluation
- Bakke, 1996: Gene Management Opportunities
- Bakke, 2000: Memorandum to Federal Caucus Re:Comments on the All-H paper
- Oregon Proposes Coho Hatchery zones
- Bakke, 1997: Washington State wild salmonid policy issues
- Bakke, 1998: Comments to NMFS Re:Upper Columbia River Steelhead ESU
- Bakke: 1998: The science and politics of salmon decline and recovery
- Myers, 1999: Tribal opposition to wild fish management policy
- Bakke, 1995: Oregon Wild Fish Policy
- Oregon Dept. of Forestry Tests Coho Plan
- Bakke, 1998: Comments to NMFS Re: Take Permits on Kelts
- Comments Re: Oregon Coho Recovery Plan
- NMFS Bows to Oregon over Coho Plan
- Comments to NMFS Re:Methow River, Wells Hatchery permit ap.
- Bakke, 1998: Comments to NMFS Re: Tucannon Hatchery
- Bakke, 1998: Invited Testimony:Senate Committee on Energy and Natural Resources
- Bakke, 1997: Oregon Steelhead Plan recommendations
- EPA Enters the Columbia River Salmon Controversy
- Comments to ODFW Re: Willamette Basin Fish Management Plan
- Cascadia Editorial 10/97
- Judge March's 1998 Fall Fishery Decision
- Bakke, 2002: Comments to ODFW Re: Native Fish Policy
- Bakke, 1997: Sandy River Management Plan comments
- Bakke, 1998: Letter to the Editor Re: BPA Audit
- Bakke, 1998: Testimony to ODFW Re: Willamette River Spring Chinook Plan
- Bakke, 2003: Comments to ODFW Re: Hatchery Policy
- Bakke, 2004: Comments on 2004 Draft Biological Opinion
- Bakke, 2004: EIS Scoping Comments on Mitchell Act Hatcheries on the Columbia
- Bakke, 2004: Comments on the State's Proposed Biological assessment for exp.
- McGie, 2004: ODFW: Stock Recruitment in Summer-Run Steelhead of the North Umpqua River, Oregon
- Bakke, 1999: Snake River B-Run Steelhead Manged For Extinction
Nutrient Enrichment
- Wipfli, 2003: Marine Subsidies in Freshwater Ecosystems: Salmon Carcasses Increase the Growth Rates of Stream-Resident Salmonids
- Schmidt, 1998: Influence of Carcass-Derived Nutrients on Sockeye Salmon Productivity of Karluk Lake, Alaska
- Gresh, 2000:. An Estimation of Historic and Current Levels of Salmon Production in Northest Pacific Ecosystem
- Wipfli, 2004: Restoring Productivity of Salmon-Based Food Webs: Contrasting Effects of Salmon Carcass and Salmon Carcass Analog Additions on Stream-Resident Salmonids (Full Text .pdf)
- Stockner, 2000: Cultural Oligotrophication: Causes and Consequences for Fisheries Resources
- Moore, 2004: Nutrient Export from Freshwater Ecosystems by Anadromous Sockeye Salmon(Full Text .pdf)
- Wipfli, 2003: Marine Subsidies in Freshwater Ecosystems: Salmon Carcasses Increase the Growth Rates of Stream-Resident Salmonids
- Cederholm, 1999: Pacific Salmon Carcasses: Essential Contributions of Nutrients and Energy for Aquatica nd Terrestrial Ecosystems (Full text .pdf)
- Missildine, 2005: Slamon Carcass Deployment: A Potential Pathway for PCB Contamination (Full Text .pdf)
- Bilby, 2003: : Transfer of Nutrients from Spawning Salmon to Riparian Vegetation in Western Washington (Full Text .pdf)
- Larkin, 1997: Implications of Trends in Marine-derived Nutrient Influx to South Coastal British Columbia Salmonid Production(Full Text .pdf)
- Heintz, 2004: Marine Subsidies in Freshwater: Effects of Salmon Carcasses on Lipid Class and Fatty Acid Composition of Juvenile Coho Salmon (Full Text .pdf)
- Wipfli, 1997: Abstract: Terrestrial Invertebrates as Salmonid Prey and Nitrogen Sources in Streams: Contrasting Old-growth and Young-growth Riparian Forests in SE Alaska
- Rader, 1997: Abstract: A Functional Classification of the Drift: Traits that Influence Invertebrate Availabilty to Salmonids
- Duston, 1997: Abstract: Effect of Winter Food Deprivation on Growth and Sexual Maturity of Atlantic Salmon(Salmo salar) in Seawater
- Wold, 1999: Abstract: Effects of Salmon Carcass Decomposition on Biofilm Growth and Wood Decomposition
- Wipfli, 1999: Abstract: Influence of Salmon Spawner Densities on Stream Productivity in Southeast Alaska
- Wipfli, 1998: Abstract: Influence of Salmon Carcasses on Stream Productivity: Response of Biofilm and Benthic Macroinvertebrates in Southeastern Alaska
- Bilby, 1998: Abstact: Response of Juvenile Coho Salmon (O. kisutch) and Steelhead (O. mykiss) to the Addition of Salmon Carcasses to two Streams in SW Washington
- Negishi, 2003: Abstract: Responses of Organic Matter and Macroinvertebrates to Placements of Boulder Clusters in a Small Stream of Southwestern British Columbia, Canada
- Chaloner, 2002: Abstract: Marine Carbon and Nitrogen in Southeastern Alaska Stream Food Webs: Evidence from Artificial and Natural Streams
- Bilby, 1995: Incorporation of Nitrogen and Carbon form Spawning Coho Salmon
- Yuskavitch, : Debris Dam Dynamics
- Importance of Carcasses to Salmon Recovery
- Armstrong, 1971: Age, Food and Migration of Cutthroat Trout at Eva Lake, AK
- Cederholm, 1999, Pacific Salmon Carcasses
Predation
Misc.
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